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metabric dna microarray datasets  (Thermo Fisher)


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    Thermo Fisher metabric dna microarray datasets
    Metabric Dna Microarray Datasets, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+dataset/DNA/pm41686639-557-27-26
    Average 99 stars, based on 1 article reviews
    metabric dna microarray datasets - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Microarray:

    Article Title: A new method based on kernel feature selection topredict important vernalization genes in wheat(Triticum aestivum L.)
    Article Snippet: .. In our current research, we analyzed an Affymetrix microarray dataset containing 61,290 probe sets, which was derived from previously published data. ..

    Article Title: Large-scale Integrative Analysis of Juvenile Idiopathic Arthritis for New Insight into Its Pathogenesis
    Article Snippet: .. This study used an Affymetrix microarray dataset (GEO study: GSE13501 ) and two RNA-seq datasets (GEO study: GSE112057 and GSE79970 ) containing mRNA expression data on JIA patients and healthy controls. ..

    Article Title: In Silico Prediction of Hub Genes Involved in Diabetic Kidney and COVID-19 Related Disease by Differential Gene Expression and Interactome Analysis.
    Article Snippet: .. First, we performed raw data normalization using the No GSE305029 Affymetrix microarray dataset. ..

    Article Title: Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa
    Article Snippet: .. In addition, we compared 5mC profiles among the three tissue culture stages to the Populus Affymetrix microarray dataset [ ] to ascertain if any broad relationships between cytosine methylation and gene expression exist. ..

    Article Title: Combining Molecular Subtypes with Multivariable Clinical Models Has the Potential to Improve Prediction of Treatment Outcomes in Prostate Cancer at Diagnosis
    Article Snippet: .. In brief, Affymetrix microarray dataset was normalised using the RMA algorithm [ ] or previous normalised values were used. ..

    Article Title: Inhibition of mitochondrial folate metabolism drives differentiation through mTORC1 mediated purine sensing
    Article Snippet: .. Affymetrix microarray dataset (E-MTAB-2581) was analysed using Bioconductor. ..

    Article Title: Simcluster: clustering enumeration gene expression data on the simplex space
    Article Snippet: .. The objective of this example is to show that Simcluster is able to reconstruct the clustering result obtained for an Affymetrix microarray dataset when the input is a simulated transcript enumeration dataset, built to mimic the real microarray biological data. ..

    Derivative Assay:

    Article Title: A new method based on kernel feature selection topredict important vernalization genes in wheat(Triticum aestivum L.)
    Article Snippet: .. In our current research, we analyzed an Affymetrix microarray dataset containing 61,290 probe sets, which was derived from previously published data. ..

    RNA Sequencing Assay:

    Article Title: Large-scale Integrative Analysis of Juvenile Idiopathic Arthritis for New Insight into Its Pathogenesis
    Article Snippet: .. This study used an Affymetrix microarray dataset (GEO study: GSE13501 ) and two RNA-seq datasets (GEO study: GSE112057 and GSE79970 ) containing mRNA expression data on JIA patients and healthy controls. ..

    Expressing:

    Article Title: Large-scale Integrative Analysis of Juvenile Idiopathic Arthritis for New Insight into Its Pathogenesis
    Article Snippet: .. This study used an Affymetrix microarray dataset (GEO study: GSE13501 ) and two RNA-seq datasets (GEO study: GSE112057 and GSE79970 ) containing mRNA expression data on JIA patients and healthy controls. ..

    Methylation:

    Article Title: Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa
    Article Snippet: .. In addition, we compared 5mC profiles among the three tissue culture stages to the Populus Affymetrix microarray dataset [ ] to ascertain if any broad relationships between cytosine methylation and gene expression exist. ..

    Gene Expression:

    Article Title: Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa
    Article Snippet: .. In addition, we compared 5mC profiles among the three tissue culture stages to the Populus Affymetrix microarray dataset [ ] to ascertain if any broad relationships between cytosine methylation and gene expression exist. ..



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    TRIM21 is elevated in astrocytes across MS. A Analysis of TRIM21 mRNA expression in the control and white matter lesion tissues of MS patients based on gene expression profiling microarray data ( <t>GSE138614</t> ). B TRIM21 mRNA levels in PBMC samples of healthy controls (n = 12) and MS patients (n = 20) were quantified by RT-qPCR. C Representative immunoblots and corresponding quantification of TRIM21 protein levels in brain tissues from EAE mice at 28 dpi (n = 5). D Representative immunoblot images and the corresponding quantitative analysis of TRIM21 protein expression in spinal cord tissues from EAE mice at 28 dpi (n = 5). E Immunofluorescence co-localization analysis of TRIM21 (red) and the astrocyte marker GFAP (green) in brain and spinal cord sections from control and EAE mice at 28 dpi (n = 5). Scale bar, 50 µm
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    SIRT3 is downregulated in RCC. ( A ) Based on the GEO <t>GSE53757</t> dataset, SIRT3 mRNA levels in RCC tissues were compared with those in normal tissues. ( B ) SIRT3 protein levels in RCC tissues were analyzed in comparison to adjacent normal tissues using CPTAC data. ( C ) SIRT3 protein levels in RCC tissues and normal tissues were detected using immunohistochemistry (IHC). A scatter plot was generated to display the expression of SIRT3 in adjacent normal tissues versus RCC tissues. ( D, E ) Enrichment plots were produced to illustrate the gene expression signatures for proliferation (CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN) and migration (GOBP_ENDOTHELIAL_CELL_MIGRATION). *** P < 0.001.
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    Image Search Results


    TRIM21 is elevated in astrocytes across MS. A Analysis of TRIM21 mRNA expression in the control and white matter lesion tissues of MS patients based on gene expression profiling microarray data ( GSE138614 ). B TRIM21 mRNA levels in PBMC samples of healthy controls (n = 12) and MS patients (n = 20) were quantified by RT-qPCR. C Representative immunoblots and corresponding quantification of TRIM21 protein levels in brain tissues from EAE mice at 28 dpi (n = 5). D Representative immunoblot images and the corresponding quantitative analysis of TRIM21 protein expression in spinal cord tissues from EAE mice at 28 dpi (n = 5). E Immunofluorescence co-localization analysis of TRIM21 (red) and the astrocyte marker GFAP (green) in brain and spinal cord sections from control and EAE mice at 28 dpi (n = 5). Scale bar, 50 µm

    Journal: Journal of Neuroinflammation

    Article Title: TRIM21 promotes astrocyte-mediated neuroinflammation in experimental autoimmune encephalomyelitis by stabilizing RGMa via K33-linked ubiquitination

    doi: 10.1186/s12974-026-03769-4

    Figure Lengend Snippet: TRIM21 is elevated in astrocytes across MS. A Analysis of TRIM21 mRNA expression in the control and white matter lesion tissues of MS patients based on gene expression profiling microarray data ( GSE138614 ). B TRIM21 mRNA levels in PBMC samples of healthy controls (n = 12) and MS patients (n = 20) were quantified by RT-qPCR. C Representative immunoblots and corresponding quantification of TRIM21 protein levels in brain tissues from EAE mice at 28 dpi (n = 5). D Representative immunoblot images and the corresponding quantitative analysis of TRIM21 protein expression in spinal cord tissues from EAE mice at 28 dpi (n = 5). E Immunofluorescence co-localization analysis of TRIM21 (red) and the astrocyte marker GFAP (green) in brain and spinal cord sections from control and EAE mice at 28 dpi (n = 5). Scale bar, 50 µm

    Article Snippet: The microarray dataset GSE138614 was retrieved from the Gene Expression Omnibus (GEO) repository of the National Center for Biotechnology Information ( https://www.ncbi.nlm.nih.gov/geo/ ).

    Techniques: Expressing, Control, Gene Expression, Microarray, Quantitative RT-PCR, Western Blot, Immunofluorescence, Marker

    SIRT3 is downregulated in RCC. ( A ) Based on the GEO GSE53757 dataset, SIRT3 mRNA levels in RCC tissues were compared with those in normal tissues. ( B ) SIRT3 protein levels in RCC tissues were analyzed in comparison to adjacent normal tissues using CPTAC data. ( C ) SIRT3 protein levels in RCC tissues and normal tissues were detected using immunohistochemistry (IHC). A scatter plot was generated to display the expression of SIRT3 in adjacent normal tissues versus RCC tissues. ( D, E ) Enrichment plots were produced to illustrate the gene expression signatures for proliferation (CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN) and migration (GOBP_ENDOTHELIAL_CELL_MIGRATION). *** P < 0.001.

    Journal: Scientific Reports

    Article Title: SIRT3 suppresses renal cancer progression by regulating IDH2 acetylation

    doi: 10.1038/s41598-026-37783-6

    Figure Lengend Snippet: SIRT3 is downregulated in RCC. ( A ) Based on the GEO GSE53757 dataset, SIRT3 mRNA levels in RCC tissues were compared with those in normal tissues. ( B ) SIRT3 protein levels in RCC tissues were analyzed in comparison to adjacent normal tissues using CPTAC data. ( C ) SIRT3 protein levels in RCC tissues and normal tissues were detected using immunohistochemistry (IHC). A scatter plot was generated to display the expression of SIRT3 in adjacent normal tissues versus RCC tissues. ( D, E ) Enrichment plots were produced to illustrate the gene expression signatures for proliferation (CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN) and migration (GOBP_ENDOTHELIAL_CELL_MIGRATION). *** P < 0.001.

    Article Snippet: The GSE53757 microarray dataset was obtained through the National Center for Biotechnology Information Gene Expression Omnibus database (NCBI GEO, https://www.ncbi.nlm.nih.gov/gds/?term=GSE53757 ).

    Techniques: Comparison, Immunohistochemistry, Generated, Expressing, Produced, Gene Expression, Migration